PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa016336

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

ARR-B

Protein Properties

Length: 410aa MW: 46475.9 Da PI: 7.0848

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-51653	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	85.1	7.3e-27	169	222	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl Wt++LH++Fv av++L G +kA+P +il++m+v+ Lt ++v+SHLQkYR Lsa016336 169 KPRLSWTKDLHNKFVAAVKHL-GVDKAIPTSILKVMNVENLTKQNVASHLQKYRG 222 79*****************.******************************5 PP
2	Response_reg	76.9	7.4e-26	20	127	1	108
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+p+ +++l+ +l+k +y +v+++ ++ al++l+e++ +Dl++ D+ mp+mdG++ll++ e +lp+i+++++g+ + +++ + Ga Lsa016336 20 VLAVDDDPACLKILEALLRKCQY-HVTTTNQAVLALQMLRENKekFDLVISDVCMPDMDGFKLLEHVGLEM-DLPVIMLSSYGDTKHVTKGIYHGAC 114 799******************.***********887778******************6644.8******************** PP EEEESS--HHHHH CS Response_reg 96 dflsKpfdpeelv 108 d+l Kp+ +eel Lsa016336 115 DYLLKPVRIEELK 127 ********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	4.6E-41	17	160	No hit	No description
SuperFamily	SSF52172	4.13E-35	17	142	IPR011006	CheY-like superfamily
SMART	SM00448	1.7E-30	18	130	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	41.495	19	134	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	2.6E-23	20	127	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	3.28E-28	21	134	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.6E-27	166	227	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.784	166	225	IPR017930	Myb domain
SuperFamily	SSF46689	3.94E-18	167	226	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-22	169	221	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-6	171	221	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MGVEPKSANE SDEFPVGMRV LAVDDDPACL KILEALLRKC QYHVTTTNQA VLALQMLREN 60 KEKFDLVISD VCMPDMDGFK LLEHVGLEMD LPVIMLSSYG DTKHVTKGIY HGACDYLLKP 120 VRIEELKLIW QHVIRRKIGK NRLDEVENVF SDKNEKPNKR RKDSSAQKKP RLSWTKDLHN 180 KFVAAVKHLG VDKAIPTSIL KVMNVENLTK QNVASHLQKY RGYLKRISHE ENQKGNMVIS 240 PNRRLDFAYL PTFIGYENQS LGKNSYPPNN XNWXKQVLLL VWVFLVFHLY PMIQENDSQK 300 LATTINLQEA PNVVDESILY PVTQNALGNL VCPIQSSCYV SNDGFTPMGN NVEGMIPPYS 360 TTYDGGVGSL EDIAAAMMRE EKGKGKVIVE GHSGYYDEVC YATSENYIYT

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MGVEPKSANE SDEFPVGMRV LAVDDDPACL KILEALLRKC QYHVTTTNQA VLALQMLREN  60
KEKFDLVISD VCMPDMDGFK LLEHVGLEMD LPVIMLSSYG DTKHVTKGIY HGACDYLLKP  120
VRIEELKLIW QHVIRRKIGK NRLDEVENVF SDKNEKPNKR RKDSSAQKKP RLSWTKDLHN  180
KFVAAVKHLG VDKAIPTSIL KVMNVENLTK QNVASHLQKY RGYLKRISHE ENQKGNMVIS  240
PNRRLDFAYL PTFIGYENQS LGKNSYPPNN XNWXKQVLLL VWVFLVFHLY PMIQENDSQK  300
LATTINLQEA PNVVDESILY PVTQNALGNL VCPIQSSCYV SNDGFTPMGN NVEGMIPPYS  360
TTYDGGVGSL EDIAAAMMRE EKGKGKVIVE GHSGYYDEVC YATSENYIYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	9e-23	165	228	1	64	ARR10-B
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007136967.1	1e-105	hypothetical protein PHAVU_009G0889000g, partial
Refseq	XP_014629984.1	1e-103	PREDICTED: two-component response regulator ARR12-like isoform X1
Refseq	XP_015884775.1	1e-103	PREDICTED: two-component response regulator ARR12
Swissprot	Q6K8X6	1e-100	ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBL	V7AXK2	1e-105	V7AXK2_PHAVU; Uncharacterized protein (Fragment)
TrEMBL	I1JU86	1e-103	I1JU86_SOYBN; Uncharacterized protein
TrEMBL	A0A0S3RCH7	1e-103	A0A0S3RCH7_PHAAN; Uncharacterized protein
STRING	GLYMA04G06650.1	1e-103	(Glycine max)